PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0205.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 178aa    MW: 20131.8 Da    PI: 5.3478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.0001377973555
                          TS-STCHHHHHHHHHHHHHHH CS
                   HLH 35 skKlsKaeiLekAveYIksLq 55
                           +K s ++ +e+Av+YIk+Lq
  Bostr.13671s0205.1.p 77 EGKRSSSDHVEEAVNYIKDLQ 97
                          6899****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.73E-460101No hitNo description
SuperFamilySSF474591.19E-661119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFLSSPLFI PDFVYEDELD FSSLLSPSTF QEPNPSIPIT HIEADGKQII CEITAEDDEP  60
KNKRVKRREI EKQRRQEGKR SSSDHVEEAV NYIKDLQKKI KEVSEKRDKI MRSVTHPSST  120
RECSRRSLVS SSSSLLSNCS CVGDTHIDVA VSDTILVFQV FFQVLSQAQC FMLLVTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603792.16e-57PREDICTED: transcription factor bHLH55
SwissprotQ9LN952e-58BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A0D3DXR16e-56A0A0D3DXR1_BRAOL; Uncharacterized protein (Fragment)
STRINGAT1G12540.15e-56(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.18e-38bHLH family protein